Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smarca4

Cell type

Cell type Class
Others
Cell type
Tumor
NA
NA

Attributes by original data submitter

Sample

source_name
mouse tumor
genotype
SS18-SSX+
chip antibody
Brg1
strain
C57BL/6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei was isolated from snap frozen samples. Lysates were clarified from sonicated nuclei and BAF-DNA complexes were isolated with antibody. Library was prepared using NEBnext ChIP-seq libraray prep reagent set

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
31849630
Reads aligned (%)
92.6
Duplicates removed (%)
36.8
Number of peaks
5203 (qval < 1E-05)

mm9

Number of total reads
31849630
Reads aligned (%)
92.4
Duplicates removed (%)
37.3
Number of peaks
5138 (qval < 1E-05)

Base call quality data from DBCLS SRA